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Initially these genome features were dismissed as freakish and weird, but in our hands, when we do the analyses, things like cyclical ploidization and developmentally-regulated genome rearrangements turn out to be more widespread than previously thought.
We argued, therefore, that the last common ancestor (LCA) of eukaryotes may have had a dynamic genome which could alter its ploidy cycles and rearrange its chromosomes in some developmentally-regulated way. This hypothesis got us interested in the idea that ALL eukaryotes probably mark one genome to inherit and another genome to mess around with.
As human beings, were used to thinking of two types of cells with different types of nuclei - germline cells and somatic cells. However the unicellular ciliates that we study also have two nuclei (one germline and one soma) that exist within the same cell.